This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001EAA9.1

Display Name: Russia/LOC_001EAA9.1/2024-08-21
O. Kanaeva, N. Romanenkova, V. Evseeva, N. Tolstykh, M. Blokhinova, K. Antonenkov, V. Sbarzaglia, N. Tsyganova & A. Khasanova

Sample details

Collection date
2024-08-21
Collection date (lower bound)
2024-08-21
Collection date (upper bound)
2024-08-21
Earliest release date
2025-09-28
Collection country
Russia
Collection subdivision level 1
Vologda
Isolate name
SPb_11178/24EVI/Vologda/2024/RU

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 19:59insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Pasteur Research Institute of Epidemiology and Microbiology, Saint Petersburg, Laboratory of Etiology and Control of Virus Infections

INSDC

NCBI release date
2025-09-28
NCBI update date
2025-09-28
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
726
Total SNPs
180
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
9.79%
Total stop codons
0

Submission details

Submission ID
PX360276.1
Submitting group
Date submitted
2025-12-19 19:59:14 UTC
Date released
2025-12-19 20:14:54 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A2187C
  • T2193C
  • C2199G
  • C2200T
  • C2202A
  • A2205G
  • C2208T
  • A2211T
  • C2214G
  • C2218T
  • A2220G
  • A2224G
  • A2235C
  • C2238T
  • C2247T
  • C2259T
  • C2262T
  • A2263C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:G3S
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V

    • VP3

  • VP3:I169V
  • VP3:K182R
  • VP3:D183A
  • VP3:T193I
  • VP3:S238T
    • Deletions
    None
    Insertions
    None

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