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LOC_001DEPE.1
Download
Download FASTA
Download metadata TSV
Display Name: France/LOC_001DEPE.1/2024-03-27
M. Bisseux,
A. Mirand,
J.-L. Bailly &
C. Henquell
Sample details
Collection date
2024-03-27
Collection date (lower bound)
2024-03-27
Collection date (upper bound)
2024-03-27
Earliest release date
2025-06-01
Collection country
France
Isolate name
CVA16_240017372702_FRA24
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-19 19:59
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Centre National de Reference des Enterovirus et Parechovirus, CHU Clermont-Ferrand, virologie
INSDC
NCBI release date
2025-06-01
NCBI update date
2025-06-01
INSDC accession
PQ612460.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
7401
Total SNPs
1560
Total inserted nucs
1
Total deleted nucs
5
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.89%
Total stop codons
0
Submission details
Submission ID
PQ612460.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-19 19:59:14 UTC
Date released
2025-12-19 20:13:54 UTC
Clade
Clade CV-A16
B1c
Genotype
Genotype
CV-A16
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
A
22
T
T
54
A
A
58
G
C
61
T
A
63
G
G
89
A
T
90
A
T
94
C
C
100
A
A
119
T
T
121
A
G
122
A
C
125
T
C
128
A
T
130
C
T
131
A
G
137
A
T
138
A
Show more
Deletions
126, 583, 702-704
Insertions
ins_7341:C
Amino acid mutations
Mutations called relative to the
U05876.1
reference
Substitutions
2A
2A:
D
57
N
2A:
R
68
K
2A:
S
77
T
2A:
V
102
A
2B
2B:
T
15
M
2B:
N
30
S
2B:
I
47
V
2B:
I
57
V
2B:
A
96
V
2C
2C:
N
9
S
2C:
N
23
S
2C:
A
103
V
2C:
I
228
V
2C:
R
268
K
2C:
S
271
T
2C:
V
303
I
2C:
Y
318
S
3A
3A:
P
3
L
3A:
R
6
K
3A:
D
39
E
3A:
T
49
A
3A:
I
61
V
3B
3B:
T
10
A
3B:
I
15
V
3C
3C:
V
36
I
3C:
I
56
V
3C:
V
75
I
3C:
I
86
V
3C:
N
93
S
3C:
S
95
T
3C:
A
96
G
3C:
V
103
I
3C:
V
114
I
3C:
V
157
I
3C:
I
158
V
3C:
S
177
G
3D
3D:
V
6
M
3D:
P
8
S
3D:
V
29
A
3D:
N
37
S
3D:
H
44
T
3D:
R
46
K
3D:
I
74
V
3D:
K
75
T
3D:
E
76
Q
3D:
S
93
N
3D:
Q
94
K
3D:
N
106
H
3D:
I
125
V
3D:
V
138
T
3D:
S
139
T
3D:
I
165
L
3D:
A
190
T
3D:
I
205
V
Show more
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
N
VP1:
S
14
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
R
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
I
179
V
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
V
217
I
VP2:
A
226
T
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
None
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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